AMINO ACIDS SEQUENCE ANALYSIS ON COLLAGEN



ACKNOWLEDGEMENTS

The research was partly supported by CNCSIS Romania through project AT93/2007
and UEFISCSU Romania through project ET46/2006.

BYBLIOGRAPY

1. Abraham DJ, AJ Leo, 1987, Extension of the fragment method to calculate amino acid zwitterions and side chain
partition coefficients, Proteins, 2, 130-152.

2. Black SD, DR Mould, SD Black, DR Mould, 1991, Development of Hydrophobicity Parameters to Analyze
Proteins Which Bear Post- or Cotranslational Modifications, Anal Biochem, 193, 72-82.

3. Bull HB, K Breese, 1974, Surface tension of amino acid solutions: A hydrophobicity scale of the amino acid
residues, Arch Biochem Biophys, 161, 665-670.

4. Chu ML, W de Wet, M Bernard, F Ramirez, 1985, Fine structural analysis of the human pro-alpha 1 (I) collagen
gene. Promoter structure, AluI repeats, and polymorphic transcripts, J Biol Chem, 260(4), 2315-2320.

5. Cornette JL, KB Cease, H Margalit, JL Spouge, JA Berzofsky, C DeLisi, 1987, Hydrophobicity scales and
computational techniques for detecting amphipathic structures in proteins, J Mol Biol, 195, 659-685.

6. Cowan R, RG Whittaker, 1990, Hydrophobicity indices for amino acid residues as determined by HPLC, Pept Res,
3, 75-80.

7. Dubois GM, Z Haftek, C Crozet, R Garrone, D Le Guellec, 2002, Structure and spatio temporal expression of the
full length DNA complementary to RNA coding for alpha2 type I collagen of zebrafish, Gene, 294, 55-65.

8. Eisenberg D, E Schwarz, M Komaromy, R Wall, 1984, Analysis of membrane and surface protein sequences with
the hydrophobic moment plot, J Mol Biol, 179, 125-142.

9. Engelman DM, TA Steitz, A Goldman, 1986, Identifying nonpolar transbilayer helices in amino acid sequences of
membrane proteins, Annu Rev Biophys Biophys Chem, 15, 321-353.

10. Fauchere J-L, VE Pliska, 1983, Hydrophobic parameters of amino-acid side-chains from the partitioning of N-
acetyl-amino-acid amide, Eur J Med Chem, 18, 369-375.

11. Fietzek PP, K Kuhn, 1975, The covalent structure of collagen: amino-acid sequence of the cyanogen-bromide
peptides alpha1-CB2, alpha1-CB4 and alpha1-CB5 from calf-skin collagen, Eur J Biochem, 52 (1), 77-82.

12. Fukumitsu N, M Uchiyama, Y Mori, K Kishimoto, J Nakada, 2003, A comparative study of prostate specific
antigen (PSA), C-terminal propeptide of blood type I procollagen (PICP) and urine type I collagen-crosslinked N
telopeptide (NTx) levels using bone scintigraphy in prostate cancer patients, Ann Nucl Med, 17(4), 297-303.

13. RC Gensure, O Makitie, Catherine Barclay, Catherine Chan, SR DePalma, M Bastepe, H Abuzahra, R Couper, S
Mundlos, D Sillence, Leena Ala Kokko, JG Seidman, WG Cole, H Juppner, 2005, A novel Col1A1 mutation in
infantile cortical hyperostosis (Caffey disease) expands the spectrum of collagen-related disorders, J Clin Invest,
115(5), 1250-1257.

14. Guy HR, 1985, Amino acid side-chain partition energies and distribution of residues in soluble proteins, Biophys J,
47, 61-70.

15. Hessa Tara, H Kim, K Bihlmaier, Carolina Lundin, Jorrit Boekel, Helena Andersson, IngMarie Nilsson, SH White
and G von Heijne, 2005, Recognition of transmembrane helices by the endoplasmic reticulum translocon, Nature,
433, 377-381.

16. Hoop TP, KR Woods, 1981, Prediction of protein antigenic determinants from amino acid sequences, Proc Natl
Acad Sci USA, 78, 3824-3828.

17. Howden P, Direct Submission. Submitted (05-JUN-2007) Wellcome Trust Sanger Institute, Hinxton,
Cambridgeshire, CB10 ISA, UK.
http://www.sanger.ac.uk/Projects/D rerio/faqs.shtml#dataeight

18. Janin J, 1979, Surface and inside volumes in globular proteins, Nature, 277, 491-492.

19. Kadler KE, DF Holmes, JA Trotter, JA Chapman, 1996, Collagen fibril formation, Biochem J, 316, 1-11.

20. Kwitek Anne E., Jo Gullings-Handley, J Yu, DC Carlos, Kimberly Orlebeke, J Nie,1 J Eckert, Angela Lemke,
Jaime Wendt Andrae, Susan Bromberg, D Pasko, D Chen, TE Scheetz, TL Casavant, MB Soares, VC Sheffield, PJ
Tonellato, HJ Jacob, 2004, High-density rat radiation hybrid maps containing over 24,000 SSLPs, genes, and ESTs
provide a direct link to the rat genome sequence, Genome Res, 14(4), 750-757.

21. Kyte J, RF Doolittle, 1982, A Simple Method for Displaying the Hydropathic Character of a Protein, J Mol Biol,
157, 105-132.

22. Lee K-S, H-R Song, T-J Cho, HJ Kim, T-M Lee, H-S Jin, H-Y Park, S Kang, S-C Jung, SK Koo, 2006, Mutational
spectrum of type I collagen genes in Korean patients with osteogenesis imperfecta, Hum Mutat, 27(6):599.

23. Lowe JK, R Guyon, ML Cox, DC Mitchell, AL Lonkar, F Lingaas, C Andre, F Galibert, EA Ostrander, KE
Murphy, 2003, Radiation hybrid mapping of the canine type I and type IV collagen gene subfamilies, Funct Integr
Genomics, 3, 112-116.

24. Malfait F, S Symoens, P Coucke, L Nunes, S De Almeida, A De Paepe, 2006, Total absence of the alpha2(I) chain
of collagen type I causes a rare form of Ehlers-Danlos syndrome with hypermobility and propensity to cardiac
valvular problems, J Med Genet, 43(7), E36.

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