AMINO ACIDS SEQUENCE ANALYSIS ON COLLAGEN

25. Manavalan P, PK Ponnuswamy, 1978, Hydrophobic character of amino acid residues in globular proteins, Nature,
275, 673-674.

26. Miyazawa S, RL Jernigen, 1985, Estimation of Effective Interresidue Contact Energies from Protein Crystal
Structures: Quasi-Chemical Approximation, Macromolecules, 18, 534-552.

27. Orgel JP, TC Irving, A Miller, TJ Wess, 2006, Microfibrillar structure of type I collagen in situ, Proc Natl Acad
Sci USA, 103(24), 9001-9005.

28. Parker JMR, D Guo, RS Hodges, 1986, New Hydrophilicity Scale Derived from High-Performance Liquid
Chromatography Peptide Retention Data: Correlation of Predicted Surface Residues with Antigenicity and X-ray-
Derived Accessible Sites?, Biochemistry, 25, 5425-5431.

29. Pollitt R, R McMahon, J Nunn, R Bamford, A Afifi, N Bishop, A Dalton, 2006, Mutation analysis of Col1A1 and
Col1A2 in patients diagnosed with osteogenesis imperfecta type I-IV, Hum Mutat, 27(7), 716.

30. Ralston SH, AG Uitterlinden, Maria L Brandi, Susana Balcells, BL Langdah, P Lips, R Lorenc, Barbara
Obermayer-Pietsch, Serena Scollen, Mariona Bustamante, Lise Bjerre Husted, AH Carey, A Diez-Perez, Alison M
Dunning, A Falchetti, Elzbieta Karczmarewicz, M Kruk, JPTM van Leeuwen, JBJ van Meurs, J Mangion, Fiona
EA McGuigan, L Mellibovsky, Francesca del Monte, HAP Pols, J Reeve, DM Reid, W Renner, F Rivadeneira,
Natasja M. van Schoor, RE Sherlock, JPA Ioannidis, 2006, Large-scale evidence for the effect of the ColIA1 Sp1
polymorphism on osteoporosis outcomes: the GENOMOS study, PLoS Med, 3(4):e90.

31. Rao MJK, P Argos, 1986, A conformational preference parameter to predict helices in integral membrane proteins,
Biochim Biophys Acta, 869, 197-214.

32. Rose GD, AR Geselowitz, GJ Lesser, RH Lee, MH Zehfus, 1985, Hydrophobicity of amino acid residues in
globular proteins, Science, 229, 834-838.

33. Roseman MA, 1988, Hydrophilicity of polar amino acid side-chains is markedly reduced by flanking peptide
bonds, J Mol Biol, 200, 513-522.

34. Runyan CE, HW Schnaper, AC Poncelet, 2003, Smad3 and PKCdelta mediate TGF-beta1-induced collagen I
expression in human mesangial cells, Am J Physiol Renal Physiol, 285(3), F413-F422.

35. Sereda TJ, CT Mant, FD Sonnichsen, RS Hodges, 1994, Reversed-phase chromatography of synthetic amphipathic
a-helical peptides as a model for ligand/receptor interactions effect of changing hydrophobic environment on the
relative hydrophilicity/hydrophobicity of amino acid side- chains, J Chromatogr A, 676(1), 139-153.

36. Shirai T, S Hattori, M Sakaguchi, S Inouye, A Kimura, T Ebihara, S Irie, Y Nagai, H Hori, 1998, The complete
cDNA coding sequence for the bovine proalpha2(I) chain of type I procollagen, Matrix Biol, 17 (1), 85-88.

37. Simon MP, F Pedeutour, N Sirvent, J Grosgeorge, F Minoletti, JM Coindre, MJ Terrier-Lacombe, N Mandahl, RD
Craver, N Blin, G Sozzi, C Turc-Carel, KP O'Brien, D Kedra, I Fransson, C Guilbaud, JP Dumanski, 1997,
Deregulation of the platelet-derived growth factor B-chain gene via fusion with collagen gene Col1A1 in
dermatofibrosarcoma protuberans and giant-cell fibroblastoma, Nat Genet, 15, 95-98.

38. Strausberg RL, Elise A Feingold, Lynette H Grouse, JG Derge, RD Klausner, FS Collins, L Wagner, Carolyn M
Shenmen, GD Schuler, SF Altschul, B Zeeberg, Kenneth H Buetow, CF Schaefer, Narayan K Bhat, RF Hopkins,
Heather Jordan, Troy Moore, SI Max, J Wang, Florence Hsieh, Luda Diatchenko, Kate Marusina, AA Farmer, GM
Rubin, L Hong, M Stapleton, MB Soares, Maria F Bonaldo, TL Casavant, TE Scheetz, MJ Brownstein, TB Usdin,
S Toshiyuki, P Carninci, Christa Prange, SS Raha, Naomi A Loquellano, GJ Peters, RD Abramson, Sara J
Mullahy, Stephanie A Bosak, PJ McEwan, KJ McKernan, Joel A Malek, Preethi H Gunaratne, S Richards, Kim C
Worley, Sarah Hale, Angela M Garcia, Laura J Gay, SW Hulyk, Debbie K Villalon, Donna M Muzny, Erica J
Sodergren, Xiuhua Lu, RA Gibbs, Jessica Fahey, E Helton, M Ketteman, M Madan, Stephanie Rodrigues, Amy
Sanchez, Michelle Whiting, A Madan, Alice C Young, Y Shevchenko, GG Bouffard, RW Blakesley, JW
Touchman, ED Green, MC Dickson, AC Rodriguez, Jane Grimwood, J Schmutz, RM Myers, YSN Butterfield, MI
Krzywinski, Ursula Skalska, Duane E Smailus, Angelique Schnerch, Jacqueline E Schein, SJM Jones, MA Marra
and Mammalian Gene Collection (MGC) Program Team, 2002, Generation and initial analysis of more than
15,000 full-lengthhuman and mouse cDNA sequences, Proc Natl Acad Sci USA, 99(26), 16899-16903.

39. Sweet RM, D Eisenberg, 1983, Correlation of sequence hydrophobicities measures similarity in three-dimensional
protein structure, J Mol Biol, 171, 479-488.

40. Veit G, B Kobbe, DR Keene, M Paulsson, M Koch, R Wagener, 2006, Collagen XXVIII, a novel von Willebrand
factor A domain-containing protein with many imperfections in the collagenous domain, J Biol Chem, 281(6),
3494-504.

41. Welling GW, WJ Weijer, R Van der Zee, S Welling-Wester, 1985, Prediction of sequential antigenic regions in
proteins, FEBS Lett, 188, 215-218.

42. Wilson KJ, A Honegger, RP Stotzel, GJ Hughes, 1981, The behaviour of peptides on reverse-phase supports
during high-pressure liquid chromatography, Biochem J, 199, 31-41.

43. Wimley WC, SH White, 1996, Experimentally determined hydrophobicity scale for proteins at membrane
interfaces, Nature Struct Biol, 3, 842-848.

316

<<   4   5   6   7   8   >>

More intriguing information